Cristin

2023
1.	Kalyanasundaram, Sumana; Lefol, Yohan Pierre; Gundersen, Sveinung; Rognes, Torbjørn; Alsøe, Lene; Nilsen, Hilde; Hovig, Eivind; Sandve, Geir Kjetil Ferkingstad; Domanska, Diana. hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks. PLOS ONE 2023 ;Volum 18.(7) s. - UiO OUS Untitled

2.	Lefol, Yohan Pierre; Korfage, Tom; Mjelle, Robin; Prebensen, Christian Haugland; Lüders, Torben; Müller, Bruno; Krokan, Hans Einar; Sarno, Antonio; Alsøe, Lene; Berdal, Jan-Erik; Sætrom, Pål; Nilsen, Hilde; Domanska, Diana. TiSA: TimeSeriesAnalysis - A pipeline for the analysis of longitudinal transcriptomics data. NAR Genomics and Bioinformatics 2023 ;Volum 5.(1) s. - NTNU UiO OUS AHUS Untitled

3.	Umu, Sinan Ugur; Vander-Elst, Karoline Rapp; Karlsen, Victoria; Chouliara, Manto; Bækkevold, Espen Sønderaal; Jahnsen, Frode Lars; Domanska, Diana. Cellsnake: a user-friendly tool for single-cell RNA sequencing analysis. GigaScience 2023 ;Volum 12. s. 1-10 UiO OUS Untitled
2022
4.	Høye, Eirik; Fromm, Bastian; Böttger, Paul H.M.; Domanska, Diana; Kristensen, Annette Torgunrud; Lund-Andersen, Christin; Abrahamsen, Torveig Weum; Fretland, Åsmund Avdem; Dagenborg, Vegar Johansen; Lorenz, Susanne; Edwin, Bjørn von Gohren; Hovig, Eivind; Flatmark, Kjersti. A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer. NAR Cancer 2022 ;Volum 4.(1) s. 1-13 OUS UiO UiT Untitled
2021
5.	Bengtsen, Mads; Winje, Ivan Myhre; Eftestøl, Einar; Landskron, Johannes; Sun, Chengyi; Nygård, Kamilla Børve; Domanska, Diana Ewa; Millay, Douglas P.; Meza, Leonardo Zepeda; Gundersen, Kristian. Comparing the epigenetic landscape in myonuclei purified with a PCM1 antibody from a fast/glycolytic and a slow/oxidative muscle. PLoS Genetics 2021 ;Volum 17:e1009907.(11) OUS UiO Untitled

6.	Safavi, Shiva; Larouche, Ariane; Zahn, Astrid; Patenaude, Anne-Marie; Domanska, Diana; Dionne, Kiersten; Rognes, Torbjørn; Dingler, Felix; Kang, Seong-Kwi; Liu, Yan; Johnson, Nathalie; Hébert, Josée; Verdun, Ramiro E.; Rada, Cristina A.; Vega, Francisco; Nilsen, Hilde; Noia, Javier M.D.. Erratum: The uracil-DNA glycosylase UNG protects the fitness of normal and cancer B cells expressing AID (NAR Cancer (2020) 2:3 (zcaa019) DOI: 10.1093/narcan/zcaa019). NAR Cancer 2021 ;Volum 3.(1) s. - AHUS UiO OUS Untitled
2020
7.	Safavi, Shiva; Larouche, Ariane; Zahn, Astrid; Patenaude, Anne-Marie; Domanska, Diana Ewa; Dionne, Kiersten; Rognes, Torbjørn; Dingler, Felix; Kang, Seong-Kwi; Liu, Yan; Johnson, Nathalie; Hébert, Josée; Verdun, Ramiro E.; Rada, Cristina; Vega, Francisco; Nilsen, Hilde; Di Noia, Javier M.. The uracil-DNA glycosylase UNG protects the fitness of normal and cancer B cells expressing AID. NAR Cancer 2020 ;Volum 2.(3) s. - AHUS UiO OUS Untitled
2019
8.	Bengtsen, Mads; Winje, Ivan; Eftestøl, Einar; Domanska, Diana Ewa; Landskron, Johannes; Gundersen, Kristian. The Epigenetic landscape of two phenotypic extreme skeletal muscles - soleus and EDL. Acta Physiologica 2019 UiO Untitled

9.	Fromm, Bastian; Domanska, Diana Ewa; Høye, Eirik; Ovchinnikov, Vladimir; Kang, Wenjing; Aparicio-Puerta, Ernesto; Johansen, Morten; Flatmark, Kjersti; Mathelier, Anthony; Hovig, Eivind; Hackenberg, Michael; Friedländer, Marc R.; Peterson, Kevin J.. MirGeneDB 2.0: the metazoan microRNA complement. Nucleic Acids Research (NAR) 2019 ;Volum 48.(D1) s. D132-D141 OUS UiO Untitled
2018
10.	Domanska, Diana Ewa; Kanduri, Srinivasa Kalyana Chakravarthi; Simovski, Boris; Sandve, Geir Kjetil. Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis. BMC Bioinformatics 2018 ;Volum 19.(481) s. - UiO Untitled

11.	Simovski, Boris; Kanduri, Srinivasa Kalyana Chakravarthi; Gundersen, Sveinung; Titov, Dmytro; Domanska, Diana Ewa; Bock, Christoph; Bossini-Castillo, Lara; Chikina, Maria; Favorov, Alexander; Layer, Ryan M.; Mironov, Alexandre A.; Quinlan, Aaron R.; Sheffield, Nathan C.; Trynka, Gosia; Sandve, Geir Kjetil. Coloc-stats: A unified web interface to perform colocalization analysis of genomic features. Nucleic Acids Research (NAR) 2018 ;Volum 46.(1) s. W186-W193 UiO OUS Untitled
2017
12.	Alsøe, Lene; Sarno, Antonio; Carracedo Huroz, Sergio; Domanska, Diana Ewa; Dingler, Felix; Lirussi, Lisa; Sengupta, Tanima; Tekin, Nuriye Basdag; Jobert, Laure; Alexandrov, Ludmil B.; Galashevskaya, Anastasia; Rada, Christina; Sandve, Geir Kjetil; Rognes, Torbjørn; Krokan, Hans Einar; Nilsen, Hilde Loge. Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1. 6th EU-US Conference on Repair of endogenous DNA damage; 2017-09-24 - 2017-09-28 AHUS NTNU UiO Untitled

13.	Alsøe, Lene; Sarno, Antonio; Carracedo Huroz, Sergio; Domanska, Diana Ewa; Dingler, Felix; Lirussi, Lisa; Sengupta, Tanima; Tekin, Nuriye Basdag; Jobert, Laure; Alexandrov, Ludmil B.; Galashevskaya, Anastasia; Rada, Cristina; Sandve, Geir Kjetil; Rognes, Torbjørn; Krokan, Hans Einar; Nilsen, Hilde Loge. Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1. Scientific Reports 2017 ;Volum 7.(1) s. - UiO AHUS NTNU OUS Untitled

14.	Domanska, Diana Ewa; Vodak, Daniel; Christin, Lund-Andersen; Salvatore, Stefania; Hovig, Eivind; Sandve, Geir Kjetil. The rainfall plot: Its motivation, characteristics and pitfalls. BMC Bioinformatics 2017 ;Volum 18. s. - UiO OUS NR Untitled

15.	Salvatore, Stefania; Domanska, Diana Ewa; Wood, Mollie; Nordeng, Hedvig Marie Egeland; Sandve, Geir Kjetil. Complex patterns of concomitant medication use: A study among Norwegian women using paracetamol during pregnancy. PLOS ONE 2017 ;Volum 12.(12) s. - FHI UiO Untitled

16.	Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman; Holden, Lars; Holden, Marit; Grytten, Ivar; Rand, Knut Dagestad; Drabløs, Finn; Johansen, Morten; Mora Ortiz, Antonio Carlos; Lund-Andersen, Christin; Fromm, Bastian; Eskeland, Ragnhild; Gabrielsen, Odd Stokke; Ferkingstad, Egil; Nakken, Sigve; Bengtsen, Mads; Nederbragt, Alexander Johan; Thorarensen, Hildur Sif; Akse, Johannes Andreas; Glad, Ingrid Kristine; Hovig, Johannes Eivind; Sandve, Geir Kjetil. GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome. GigaScience 2017 ;Volum 6.(7) Suppl. https://academic.oup s. 1-12 NTNU UiO OUS NR Untitled
2016
17.	Azab, Abdulrahman; Domanska, Diana Ewa. Software Provisioning Inside a Secure Environment as Docker Containers Using Stroll File-System. I: 2016 16th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid). Curran Associates, Inc. 2016 ISBN 9781509024544. s. 674-683 UiO Untitled

18.	Domanska, Diana Ewa; Lukasik, Szymon. Handling high-dimensional data in air pollution forecasting tasks. Ecological Informatics 2016 ;Volum 34. s. 70-91 UiO Untitled

19.	Simovski, Boris; Drabløs, Finn Sverre; Gundersen, Sveinung; Johansen, Morten; Domanska, Diana Ewa; Azab, Abdulrahman; Sandve, Geir Kjetil; Hovig, Johannes Eivind. The Genomic HyperBrowser. European Conference on Computational Biology; 2016-09-03 - 2016-09-07 NTNU UiO Untitled